SubtiBank SubtiBank
yorS [2018-12-18 18:10:48]
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yorS [2018-12-18 18:10:48]

putative SPBc2 prophage-derived 5'(3')-deoxyribonucleotidase
locus
BSU20270
pI
5.45
mw
20.27 kDa
protein length
172 aa Sequence Blast
gene length
516 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.8|Genetics/ other/ based on similarity]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]

    • Gene

    Coordinates
    2,172,932 → 2,173,450

    The protein

    Protein family

  • ilvD/edd family (according to Swiss-Prot)

    • Structure

  • [PDB|3BWV] (from Staphylococcus epidermidis, 40% identity)

    • Biological materials

    Mutant

  • BKE20270 (Δ[gene|18F8A8EBABD9846966A8DEFD9D4E3F2404828E92|yorS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE20270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AATTACTTTTTTCATAAATT, downstream forward: _UP4_TAAAATATCTCATTTATCCA
  • BKK20270 (Δ[gene|18F8A8EBABD9846966A8DEFD9D4E3F2404828E92|yorS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK20270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AATTACTTTTTTCATAAATT, downstream forward: _UP4_TAAAATATCTCATTTATCCA